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Here is a short HowTo to get ionCube PHP Loader for all pages running.
cd /tmp wget http://downloads3.ioncube.com/loader_downloads/ioncube_loaders_lin_x86-64.tar.gz tar xfz ioncube_loaders_lin_x86-64.tar.gz mv ioncube /usr/local/ rm ioncube_loaders_lin_x86-64.tar.gz
Create following file /etc/php5/mods-available/ioncube.ini (for php5.6, for other versions just change the path)
; configuration for php ionCube PHP Loader module ; priority=01 zend_extension=/usr/local/ioncube/ioncube_loader_lin_5.6.so
Enable module
php5enmod ioncube
If you're using php5-fpm:
service php5-fpm restart
Else
service apache2 restart
Check if the module is loaded:
# php -v PHP 5.6.14-0+deb8u1 (cli) (built: Oct 4 2015 16:13:10) Copyright (c) 1997-2015 The PHP Group Zend Engine v2.6.0, Copyright (c) 1998-2015 Zend Technologies with the ionCube PHP Loader (enabled) + Intrusion Protection from ioncube24.com (unconfigured) v5.0.19, Copyright (c) 2002-2015, by ionCube Ltd.